Top 47 J.R Publications Jobs

Machine Learning Scientist / Senior Machine Learning Scientist
CALICO —South San Francisco, CA
- $170,000 - $240,000 a year
- Computer Science
- Doctor of Philosophy
- In-person
Postdoctoral Scholar - Evans School Policy Analysis and Research Group (EPAR)
University of Washington —Seattle, WA
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- 5 years
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Insight Pipe Contracting —Harmony, PA
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IMMUNOLOGY OR CANCER RESEARCH
The University of Iowa —Iowa City, IA
- Online Application
- Medicine
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Postdoctoral Scholar
Oregon Health & Science University —Portland, OR
- Online Application
- Analysis skills
- Doctor of Philosophy
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- Disability insurance
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Ph.D. Student (Florida): Plant Genome Editing
Center for Advanced Bioenergy and Bioproducts Innovation (CABBI) —Florida
- Email
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Research Scientist, Environmental Health, School of Public Health
Boston University —Boston, MA
- Full-time
- Mid-level
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Postdoc (Florida): Plant Genome Editing and Metabolic Engineering
Center for Advanced Bioenergy and Bioproducts Innovation (CABBI) —Florida
- Email
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Postdoctoral Scholar in Theoretical Chemistry
University of California Merced —Merced, CA
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Rice University —Houston, TX
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Los Alamos National Laboratory —Los Alamos, NM
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POSTDOCTORAL RESEARCH ASSOCIATE
Yadav Lab —Amherst, MA
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Postdoctoral Research Fellow
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HudsonAlpha - Post Doctoral Researcher - Cochran Lab
HudsonAlpha Institute for Biotechnology —Huntsville, AL
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(USA) Principal, Data Scientist
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Sr Computational Research Scientist- MA's Lab
St. Jude Children's Research Hospital —Memphis, TN
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Penn State University —University Park, PA
- Online Application
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12d
Compliance Data Analyst (Project Assistant)
State of New York - Higher Education Services Corporation —Albany, NY
- $32.06 - $40.77 an hour
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- Microsoft Word
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8d
Sub-Investigator
Flourish Research —Leesburg, FL
- $125,000 - $140,000 a year
- Full-time
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- Writing skills
- Paid holidays
- Disability insurance
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Machine Learning Scientist / Senior Machine Learning Scientist

CALICO -
South San Francisco, CA

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Job Details

$170,000 - $240,000 a year

Qualifications

AI models
Computational research
Scientific publications
DNA analysis
Tooling
Software coding
Data structures
Human genomics
AI tools proficiency
Publishing papers in peer-reviewed journals
Machine intelligence
Research data analysis
Bioinformatics data analysis

Full Job Description

Who We Are:

Calico (Calico Life Sciences LLC) is an Alphabet-founded research and development company whose mission is to harness advanced technologies and model systems to increase our understanding of the biology that controls human aging. Calico will use that knowledge to devise interventions that enable people to lead longer and healthier lives. Calico’s highly innovative technology labs, its commitment to curiosity-driven discovery science and, with academic and industry partners, its vibrant drug-development pipeline, together create an inspiring and exciting place to catalyze and enable medical breakthroughs.

Position Description:

Calico is seeking a machine learning scientist to join a research group investigating how genome sequence determines regulatory function and how dysregulation of these programs drives aging. We develop sequence-based deep learning models that predict gene expression, chromatin accessibility, and other functional readouts directly from DNA. We use these models to interpret human genetic variation, map causal regulatory mechanisms, and identify promising intervention points.

This work builds on a sustained research program at the intersection of deep learning and regulatory genomics, including:

Avsec, Ž. et al. Effective gene expression prediction from sequence by integrating long-range interactions. Nat Methods 18, 1196–1203 (2021).
Yuan, H. & Kelley, D. R. scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks. Nat Methods 19, 1088–1096 (2022).
Linder, J., Srivastava, D., Yuan, H., Agarwal, V. & Kelley, D. R. Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation. Nature Genetics (2025).

Position Responsibilities:

Design and train deep learning models for biological sequence analysis, with emphasis on gene regulation, single-cell genomics, and variant interpretation
Partner with experimental scientists to connect model predictions to biological mechanisms — designing validation experiments, analyzing large-scale genomics data, and translating computational findings into actionable biological insights
Communicate research through publications, open-source software, and public-facing tools

Position Requirements:

PhD in computational biology, bioinformatics, computer science, or a related field, and 0-5 years (for Scientist level) or 5+ years (for Senior Scientist level) of additional training in an industry or academic setting, with a strong publication record

Deep expertise in machine learning with solid grounding in algorithms, data structures, and statistics
Substantive knowledge of molecular biology and genetics; familiarity with genomic data types and public data resources
Hands-on experience analyzing genomics sequencing data, ideally including single-cell assays
Fluency with modern AI-assisted development and research tools (e.g., LLM-based coding assistants, literature synthesis), with a habit of proactively integrating new tools to accelerate scientific workflows
A collaborative disposition, strong follow-through, and comfort working at the interface of computation and experiment
Must be willing to work onsite at least four days per week

The estimated base salary range for this role is $170,000 - $240,000. Actual pay will be based on a number of factors including experience and qualifications. This position is also eligible for two annual cash bonuses

Apply Now

Refine Your Search

J.R Publications jobs

Machine Learning Scientist / Senior Machine Learning Scientist

Postdoctoral Scholar - Evans School Policy Analysis and Research Group (EPAR)

Estimator

IMMUNOLOGY OR CANCER RESEARCH

Postdoctoral Scholar

Ph.D. Student (Florida): Plant Genome Editing

Research Scientist, Environmental Health, School of Public Health

Postdoc (Florida): Plant Genome Editing and Metabolic Engineering

Postdoctoral Scholar in Theoretical Chemistry

Postdoctoral Associate - Bioengineering

Postdoctoral Associate - Bioengineering

Artificial Intelligence and Computer Vision for Materials Postdoctoral Research Associate

POSTDOCTORAL RESEARCH ASSOCIATE

Postdoctoral Research Fellow

HudsonAlpha - Post Doctoral Researcher - Cochran Lab

(USA) Principal, Data Scientist

Sr Computational Research Scientist- MA's Lab

Postdoctoral Scholar - Public Health Sciences

Compliance Data Analyst (Project Assistant)

Sub-Investigator

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