Top 744 Non Profit Controller Jobs

Controller
The Confidential Search Company —Boston, MA
- Up to $175,000 a year
- Full-time
- Microsoft Word
- Background check
- Microsoft Excel
- Disability insurance
- Health insurance
Quick Apply
Controller (Director of Finance)
Louisiana Baptist Foundation —Alexandria, LA
- From $75,000 a year
- Full-time
- Background check
- CPA
- Inventory management
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Director of Accounting
HealthPoint —Renton, WA
- $137,370 - $234,900 a year
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Controller
Sugar Mountain —Seattle, WA
- $180,000 - $210,000 a year
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Controller
La Clinica Del Valle —Medford, OR
- Full-time
- 7 years
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Director of Finance - Supported Living
Alpha Supported Living Services —Bothell, WA
- $123,760 - $168,480 a year
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- CPA
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Finance Controller | Where CPA Expertise Meets Mission Impact
GREEN LAKE CONFERENCE CENTER —Green Lake, WI
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4d
Controller
Alpha Supported Living Services —Bothell, WA
- $107,120 - $145,600 a year
- Full-time
- Management
- CPA
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Controller
Confidential —Chicago, IL
- $180,000 - $190,000 a year
- Full-time
- Hybrid work
- CPA
- Finance
- Bachelor's degree
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CITY CONTROLLER
City of Allentown —Allentown, PA
- $76,000 a year
- Temporary
- Background check
- Office
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12d
Non-Profit Comptroller
Non profit —New York, NY
- $125,000 - $135,000 a year
- Full-time
- CPA
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Fiscal Officer/Finance Director
Northeast Nebraska Community Action Partnership —Pender, NE
- $65,000 - $80,000 a year
- Full-time
- Background check
- Mid-level
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- Paid holidays
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4h
Chief Financial Officer
New York Association on Independent Living —Albany, NY
- $140,000 - $150,000 a year
- Email
- Hybrid work
- Background check
- Office
- Finance
- Disability insurance
- Health insurance
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COMPTROLLER (CPA)
McKee Botanical Garden —Vero Beach, FL
- $65,000 - $80,000 a year
- Part-time
- Background check
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1d
Accounting and Financial Reporting Manager
Portland Housing Authority —Portland, ME
- $81,373 - $101,717 a year
- Full-time
- Background check
- CPA
- Computer literacy
- Disability insurance
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8d
Controller
GSI Executive Search —Houston, TX
- $125,000 - $150,000 a year
- Full-time
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- Relocation assistance
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Chief Financial Officer (CFO)
Centerville Clinics —Fredericktown, PA
- Full-time
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- 5 years
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Part-Time Comptroller
Lancaster Lebanon Habitat for Humanity —Lancaster, PA
- $50 - $70 an hour
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1d
Director of Finance
The Center for Arts & Innovation —Miami, FL
- $90,000 - $105,000 a year
- Full-time
- Background check
- 7 years
- CPA
- Paid parental leave
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14d
Chief Financial Officer
Family Centered Services of Alaska —Fairbanks, AK
- $180,000 - $205,000 a year
- Full-time
- Background check
- CPA
- Office
- Health savings account
- Disability insurance
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12d

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Controller

The Confidential Search Company
Boston, MA

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Job Details

Full-time
Up to $175,000 a year

Benefits

Disability insurance
Health insurance
Dental insurance
Flexible spending account
Paid time off
Parental leave
Employee assistance program
Vision insurance
Flexible schedule
Life insurance

Qualifications

Microsoft Word
Nonprofit finance
Financial close processing
Fiscal management
Microsoft Excel
Presentation software
Accounting experience within healthcare industry
Grant funding
Bachelor's degree
GAAP
Accounting
Nonprofit financial management experience
Closing the books
Healthcare financial management
Sage ERP
Accounting
Hospital experience
Data analysis software

Full Job Description

Controller – Community Health Center ($60 Million Budget)

We have been engaged to conduct an executive search for a Controller for our client a Hospital-based Federally Qualified Health Center (FQHC) with offices in Boston, MA.

The Health Center is affiliated with a major Boston Teaching Hospital and is a Hospital licensed outpatient facility. The Controller will work at the south Boston location. There is on-site parking available and their office is located near the T.

The starting salary is up to $175,000, depending on background and experience.

Position Summary

The Controller is responsible for overseeing all financial operations of a federally qualified health center (FQHC)/Hospital Based Community Health Center with annual revenues of approximately $60 million. This position ensures financial integrity, regulatory compliance, grant management excellence, and the effective use of advanced financial technologies to support organizational growth and strategic objectives.

The Controller reports directly to the Chief Financial Officer (CFO) and provides leadership in accounting, financial reporting, budgeting, grants administration, internal controls, and financial systems modernization.

Our client in the process of implementing a new ERP system, Sage Intaact and a new payroll system, Pay.com Payroll. The new Controller will complete these implementations.

Key Responsibilities

Financial Management & Accounting

Direct all accounting operations, including general ledger, accounts payable, accounts receivable, payroll, cash management, and fixed assets.
Prepare accurate monthly, quarterly, and annual financial statements in accordance with GAAP.
Ensure timely month-end and year-end close processes.
Manage annual audits and coordinate with external auditors.
Develop and maintain strong internal controls and financial policies.

Grant Management

Oversee the financial administration of federal, state, local, private foundation, and other grant-funded programs, including Health Resources and Services Administration (HRSA) awards.
Ensure compliance with HRSA regulations, Uniform Guidance (2 CFR Part 200), Federal Financial Reports (FFRs), Notice of Award (NOA) requirements, and all grantor guidelines.
Monitor grant budgets, expenditures, drawdowns, and reporting deadlines to ensure funds are utilized appropriately and efficiently.
Prepare, review, and submit accurate financial reports, reimbursement requests, and grant-related documentation required by HRSA and other funding agencies.
Collaborate with program directors and department leaders to develop grant budgets, track spending, and maintain compliance with approved funding allocations.
Establish and maintain internal controls for grant accounting, cost allocation, time and effort reporting, and allowable cost determinations.
Coordinate grant-related audits, site visits, and compliance reviews, including HRSA operational and financial assessments.
Support grant application and renewal processes by providing financial data, budget narratives, forecasts, and sustainability analyses.
Monitor Accounts Receivable related to grant funding, including grant drawdowns, reimbursement requests, and timely collection of awarded funds.
Maintain accurate grant accounting records and ensure proper reconciliation between the general ledger, grant management systems, and HRSA reporting requirements.
Provide financial analysis and recommendations to executive leadership regarding grant performance, funding opportunities, and compliance risks.

Budgeting & Financial Planning

Lead the annual operating and capital budgeting process.
Monitor organizational performance against budget and forecasts.
Develop financial models to support strategic decision-making.
Provide variance analysis and recommendations to executive leadership.

Technology & Financial Systems Leadership

Lead implementation and optimization of advanced financial technologies, including ERP, budgeting, business intelligence, and grant management systems.
Utilize data analytics and dashboard reporting tools to improve financial visibility and decision-making.
Promote automation of accounting processes to improve efficiency and accuracy.
Partner with IT and operational leadership on system integrations and digital transformation initiatives.
Evaluate emerging technologies, including AI-driven financial reporting, predictive analytics, and workflow automation solutions.

Compliance & Risk Management

Ensure compliance with healthcare regulations, grant requirements, and financial reporting standards.
Maintain effective internal control frameworks and risk management practices.
Support compliance with Medicare, Medicaid, HRSA, and other healthcare funding requirements.
Develop and implement corrective action plans as needed.

Leadership & Staff Development

Supervise and mentor accounting and finance staff.
Foster a culture of accountability, continuous improvement, and customer service.
Develop staff competencies in grant accounting, financial analysis, and technology utilization.

Qualifications

Education

Bachelor's degree in Accounting, Finance, or related field required.
CPA strongly preferred.
Master's degree (MBA, MHA, or related field) preferred.

Experience

7–10+ years of progressive accounting and financial management experience.
Minimum 3–5 years in healthcare, community health center, hospital, or nonprofit healthcare finance.
Significant experience managing federal and state grants.
Experience overseeing organizations with annual revenues exceeding $40 million.
Proven experience with ERP systems, financial reporting software, and business intelligence platforms.

Knowledge & Skills

Strong knowledge of GAAP, nonprofit accounting, and healthcare reimbursement.
Expertise in grant compliance and Uniform Guidance requirements.
Advanced financial analysis and forecasting skills.
Experience with ERP systems such as Oracle, Workday, Sage Intacct, Microsoft Dynamics, or similar platforms.
Proficiency with data analytics, dashboard reporting, and financial automation tools.
Excellent leadership, communication, and project management abilities.

Preferred Competencies

FQHC and HRSA grant experience.
Advanced Excel, Power BI, Tableau, or similar analytics tools.
Sage Intacct preferred
Experience leading digital transformation and finance modernization initiatives.
Knowledge of AI-assisted financial reporting and process automation technologies.

This description is appropriate for a senior Controller overseeing a healthcare organization with approximately $60 million in annual revenue, substantial grant funding, and a focus on technology-driven financial management.

All inquiries will be treated confidentially.

For more information about this opportunity please contact:

Matthew O’Brien

The Confidential Search Company

860-742-1555

Job Type: Full-time

Pay: Up to $175,000.00 per year

Benefits:

Dental insurance
Disability insurance
Employee assistance program
Flexible schedule
Flexible spending account
Health insurance
Life insurance
Paid time off
Parental leave
Vision insurance

Application Question(s):

How many years of experience do you have with AI-assisted financial reporting and process automation technologies?

Education:

Bachelor's (Required)

Experience:

progressive financial management: 7 years (Required)
health center/hospital/clinic / nonprofit healthcare finance: 5 years (Required)
financial management in a $40m+ nonprofit healthcare company: 5 years (Required)
Excel, PowerPoint, Word: 5 years (Required)
excellent oral and written communications: 7 years (Required)
managing healthcare accounting, finance and reporting: 3 years (Required)
monthly and quarterly closings and all reporting: 5 years (Required)
FQHC and HRSA grant : 3 years (Required)
Sage Intaact or similar ERP systems: 3 years (Required)

Work Location: In person

Quick Apply

Refine Your Search

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