Top 93 Bioinformatics applications engineer Jobs

ML Engineer, Discovery Applications
Mithrl —San Francisco, CA
- $150,000 - $200,000 a year
- Full-time
- Office
- Analysis skills
- Senior level
- Health insurance
- Dental insurance
Information Sciences Professional (Intermediate, Senior, Principal - Open Rank), part-time (0.2 FTE; qualification dependent)
University of Colorado —Aurora, CO
- $28.06 - $46.75 an hour
- Part-time
- Remote
- Background check
- Computer Science
- Java
- Disability insurance
- Health insurance
Data Integration Engineer - Remote
Inteliquet, Inc —Washington, DC
- Full-time
- Remote
- HIPAA
- Mid-level
- Communication skills
Quick Apply
Software Developer
Sciome LLC —Research Triangle Park, NC
- $70,000 - $115,000 a year
- Full-time
- Hybrid work
- Computer Science
- Data analysis skills
- Mid-level
- Profit sharing
- Health savings account
Quick Apply
Senior Bioinformatics Data Engineer
Kaztronix —Wilmington, DE
- Contract
- Remote
- Background check
- Computer Science
- 5 years
Quick Apply
Data Science Fellow - AI/NLP
Axle —Rockville, MD
- $90,000 - $100,000 a year
- Remote
- Computer Science
- Doctor of Philosophy
- APIs
- Paid holidays
- Health insurance
Quick Apply
Bioinformatics Pipeline Test Engineer
Vytwo —Dallas, TX
- Overnight shift
- Azure
- Computer Science
- Bachelor of Science
Quick Apply
ML Engineer, Biological Analysis & Simulation
Mithrl —San Francisco, CA
- $150,000 - $200,000 a year
- Full-time
- Office
- Analysis skills
- Senior level
- Health insurance
- Dental insurance
Software Engineer
MIT Lincoln Laboratory —Lexington, MA
- $116,400 - $182,200 a year
- Computer Science
- Mid-level
- 3 years
- Health insurance
- Dental insurance
UI/UX Developer
Sciome —Research Triangle Park, NC
- Email
- Computer Science
- Mid-level
- Bachelor's degree
- Disability insurance
- Health insurance
Software Developer
Sciome —Research Triangle Park, NC
- Email
- Computer Science
- Mid-level
- Bachelor's degree
- Disability insurance
- Health insurance
Bioinformatics Software Engineer II, Pathology and Lab Medicine
Memorial Sloan Kettering Cancer Center —New York, NY
- $102,800 - $164,500 a year
- Online Application
- Computer science
- Azure
- Computer Science
Research Software Engineer – Clinical NLP (Data Science & AI Institute)
Johns Hopkins University —Baltimore, MD
- Full-time
- Hybrid work
- Background check
- Computer Science
- Office
Research Technology Specialist - Human Nutrition Research Center on Aging
Tufts University —Boston, MA
- $81,200 - $120,900 a year
- Hybrid work
- Computer Science
- Mid-level
- 3 years
QA Engineer, Scientific Workflows
Mithrl —San Francisco, CA
- $150,000 - $200,000 a year
- Full-time
- Office
- Analysis skills
- Doctor of Philosophy
- Health insurance
- Dental insurance
Senior Software Engineer II
Freenome —Brisbane, CA
- $161,925 - $227,325 a year
- Remote
- Azure
- Computer Science
- Bachelor of Science
Lead PHP Engineer (Laravel) - Remote
Quest Diagnostics —Secaucus, NJ
- $145,000 - $175,000 a year
- Full-time
- Bachelor of Science
- 3 years
- Bachelor's degree
- Employee stock purchase plan
- Disability insurance
Quick Apply
Data Engineer, Scientific Data Ingestion
Mithrl —San Francisco, CA
- $150,000 - $200,000 a year
- Full-time
- 5 years
- Office
- Senior level
- Health insurance
- Dental insurance
AI Data Scientist-Furman lab
Buck Institute —Novato, CA
- $60,000 - $75,000 a year
- Online Application
- Computer Science
- System design
- Databases
- Paid parental leave
- Health insurance
Quick Apply
Data Scientist II
Axle —Rockville, MD
- $130,000 - $145,000 a year
- Remote
- Computer Science
- Mid-level
- Analysis skills
- Paid holidays
- Health insurance
Quick Apply

I want to receive the latest job alert for bioinformatics applications engineer

By signing in to your account, you agree to SimplyHired's Terms of Service and consent to our Cookie and Privacy Policy.

Explore jobs in more locations

bioinformatics applications engineer jobs near

Research Specialist jobs in Boston, MA

Software Engineer jobs in Lexington, MA

Data Engineer jobs in San Francisco, CA

Data Scientist jobs in Rockville, MD

Software Engineer jobs in Research Triangle Park, NC

Senior Software Engineer jobs in New York, NY

Ai Ml Engineer jobs in San Francisco, CA

Quality Assurance Engineer jobs in San Francisco, CA

Ai Scientist jobs in Novato, CA

Data Scientist jobs in Baltimore, MD

Cash Application Specialist jobs in Chicago, IL

Peer Support Specialist jobs in Buffalo, NY

Research Specialist jobs in Collegeville, PA

Research Specialist jobs in Phoenix, AZ

Clinical Research Coordinator jobs in Ann Arbor, MI

Clinical Research jobs in Naples, FL

Research Specialist jobs in Bedford, MA

Research Specialist jobs in Topeka, KS

Electrical Engineer jobs in Orlando, FL

Software Engineer jobs in Pittsburgh, PA

ML Engineer, Discovery Applications

Mithrl
San Francisco, CA

Apply Now

Job Details

Full-time
$150,000 - $200,000 a year

Benefits

Health insurance
Dental insurance
401(k)
Vision insurance

Qualifications

Computational research
Process design
Cross-functional collaboration
Bioinformatics data analysis
Pharmaceutical research experience
Python
Cross-functional communication

Full Job Description

ABOUT MITHRL

We imagine a world where new medicines reach patients in months, not years, and where scientific breakthroughs happen at the speed of thought.

Mithrl is building the world’s first commercially available AI Co-Scientist. It is a discovery engine that transforms messy biological data into insights in minutes. Scientists ask questions in natural language, and Mithrl responds with analysis, novel targets, hypotheses, and patent-ready reports.

Our traction speaks for itself:

12X year-over-year revenue growth
Trusted by leading biotechs and big pharma across three continents
Driving real breakthroughs from target discovery to patient outcomes.

ABOUT THE ROLE

We are hiring an ML Engineer, Discovery Applications to build the high level, end-to-end scientific workflows that power real bench to bench decision making inside the Mithrl platform. This role focuses on building the application layer on top of the AI Co-Scientist. Your work will shape how scientists discover biomarkers, identify and validate targets, design experiments, and run early discovery programs that extend all the way to IND-enabling work.

This role requires a deep understanding of the discovery and preclinical development cycle. You should understand how research teams move from early target hypotheses to biomarker strategy, hit identification, hit to lead, lead optimization, and preclinical validation. Your applications will support decision making across this entire arc and will be consumed directly by scientists and program teams.

You will design multi step workflows that combine analysis modules, ML models, domain logic, and agentic reasoning into complete applications. These applications cover biomarker discovery, target ID, target validation, small molecule hit identification and optimization, and gene therapy workflows. You will also extend applications to support new data modalities as our platform expands.

WHAT YOU WILL DO

Build full discovery applications that support biomarker identification, target discovery, target validation, small molecule design workflows, and gene therapy programs
Stand up new analyses that support application logic and improve or extend the existing analysis suite
Create multi step reasoning flows that integrate ML models, statistical methods, pathway context, simulation tools, and biological domain logic
Design application specific workflows for compound evaluation, program prioritization, and multi modal evidence integration
Extend existing applications to incorporate new data modalities and new analysis routines
Build reusable frameworks for Design of Experiments across biomarker discovery, target ID, validation, small molecule programs, and gene therapy
Implement and improve the AI systems that orchestrate and chain analyses into coherent applications used directly by scientists
Collaborate closely with ML engineers, bioinformatics teams, and data ingestion teams to ensure workflows run on consistent data
Validate scientific correctness and ensure applications produce accurate, reproducible, and interpretable results

WHAT YOU BRING

Required Qualifications

Strong experience in ML, computational biology, scientific computing, or a related field
Deep understanding of the drug discovery and preclinical development cycle including early discovery, target identification, target validation, hit identification, hit to lead, lead optimization, and IND-enabling work
Experience building analytical workflows or application logic for biological or scientific data
Familiarity with key discovery analysis methods such as differential expression, pathway analysis, clustering, enrichment, and target scoring
Proficiency in Python and scientific computing libraries and comfort with building multi step workflows
Ability to convert scientific questions into structured, reproducible workflows that support real decision making
Strong communication skills and ability to collaborate with cross functional engineering and biology teams

Nice to Have

Experience building LLM powered agents or multi agent reasoning systems
Experience with multi modal biological data integration
Experience with computational chemistry tools such as docking or ADMET modeling
Familiarity with biological ontologies, curated knowledge sources, or pathway databases
Prior experience in a tech bio startup, biotech R&D group, or scientific software platform

WHAT YOU WILL LOVE AT MITHRL

High ownership and impact: You will build the decision making applications that scientists rely on throughout the discovery and preclinical process
Team: Join a tight-knit, talent-dense team of engineers, scientists, and builders
Culture: We value consistency, clarity, and hard work. We solve hard problems through focused daily execution
Speed: We ship fast (2x/week) and improve continuously based on real user feedback
Location: Beautiful SF office with a high-energy, in-person culture
Benefits: Comprehensive PPO health coverage through Anthem (medical, dental, and vision) + 401(k) with top-tier plans

We encourage you to apply even if you do not believe you meet every single qualification. Not all strong candidates will meet every single qualification as listed. Research shows that people who identify as being from underrepresented groups are more prone to experiencing imposter syndrome and doubting the strength of their candidacy, so we urge you not to exclude yourself prematurely and to submit an application if you're interested in this work. We think AI systems like the ones we're building have enormous social and ethical implications. We think this makes representation even more important, and we strive to include a range of diverse perspectives on our team.

Compensation Range: $150K - $200K

Apply Now

Refine Your Search

bioinformatics applications engineer jobs

ML Engineer, Discovery Applications

Information Sciences Professional (Intermediate, Senior, Principal - Open Rank), part-time (0.2 FTE; qualification dependent)

Data Integration Engineer - Remote

Software Developer

Senior Bioinformatics Data Engineer

Data Science Fellow - AI/NLP

Bioinformatics Pipeline Test Engineer

ML Engineer, Biological Analysis & Simulation

Software Engineer

UI/UX Developer

Software Developer

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Research Software Engineer – Clinical NLP (Data Science & AI Institute)

Research Technology Specialist - Human Nutrition Research Center on Aging

QA Engineer, Scientific Workflows

Senior Software Engineer II

Lead PHP Engineer (Laravel) - Remote

Data Engineer, Scientific Data Ingestion

AI Data Scientist-Furman lab

Data Scientist II

I want to receive the latest job alert for bioinformatics applications engineer

Explore jobs in more locations

Job Seeker Tools

Employer Tools

Browse

Stay Connected