Top 9 Bioinformatics software engineer Jobs in New York Ny

Bioinformatics Software Engineer II, Pathology and Lab Medicine
Memorial Sloan Kettering Cancer Center —New York, NY
- $102,800 - $164,500 a year
- Online Application
- Computer science
- Azure
- Computer Science
Bioinformatics Engineer II (Remote/East Coast)
Parse Biosciences —Newark, NJ
- $100,000 - $135,000 a year
- Full-time
- Remote
- 5 years
- System design
- Mid-level
AI/ML Engineer - Vaccines Modeling and Antigen Discovery
Pfizer —Pearl River, NY
- $106,000 - $176,600 a year
- Online Application
- Hybrid work
- Computer Science
- System design
- Master's degree
- Paid holidays
- Relocation assistance
Lead Bioinformatics Engineer
Quest Diagnostics —Secaucus, NJ
- $155,000 - $175,000 a year
- Full-time
- Bachelor of Science
- System design
- 3 years
- Employee stock purchase plan
- Disability insurance
Quick Apply
Lead PHP Engineer (Laravel) - Remote
Quest Diagnostics —Secaucus, NJ
- $145,000 - $175,000 a year
- Full-time
- Bachelor of Science
- 3 years
- Bachelor's degree
- Employee stock purchase plan
- Disability insurance
Quick Apply
Staff Engineer - ML Operations - USA Remote
Danaher Corporation —New York, NY
- $180,000 - $220,000 a year
- Full-time
- Remote
- Computer Science
- 5 years
- HIPAA
- Health insurance
- Dental insurance
8d
Linux (DevOps) Engineer| Information Technology
Rockefeller University —New York, NY
- $90,000 - $100,000 a year
- Full-time
- Azure
- Mid-level
- AWS
Pipeline Verification & Validation Manager.
Katalyst Healthcares & Life Sciences —Avenel, NJ
- Contract
- Azure
- Computer Science
- Master's degree
Quick Apply
Postdoctoral Associate | Vertebrate Genome Laboratory
Rockefeller University —New York, NY
- $72,100 a year
- Full-time
- Computer Science
- System design
- Analysis skills

Other jobs to consider

Find your next job by exploring related positions.

Bioinformatics Software Engineer II, Pathology and Lab Medicine
Memorial Sloan Kettering Cancer Center —New York, NY
BS in Bioinformatics, Computer Science, or related field + 5 years of experience OR MS in Bioinformatics, Computer Science, or related field + 2 years of…
$102,800 - $164,500 a year
AI Engineer Clinical Data Science
Katalyst Healthcares & Life Sciences —Manhattan, NY
You will design, develop and deploy generative AI systems that automate clinical reporting workflows, extract intelligence from documents, and accelerate data-…
Quick Apply

I want to receive the latest job alert for bioinformatics software engineer in new york ny

By signing in to your account, you agree to SimplyHired's Terms of Service and consent to our Cookie and Privacy Policy.

Explore jobs in more locations

bioinformatics software engineer jobs near new york ny

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Memorial Sloan Kettering Cancer Center -
New York, NY

Apply Now

Job Details

$102,800 - $164,500 a year

Qualifications

Containerization systems
Version control
Continuous integration
Web applications
DevOps automation
Debugging

Full Job Description

Department: Informatics & Information Technology

Location: New York, NY

Salary: 102,800.00 - 164,500.00 USD Annual

Job details

About Us:

The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe.

Exciting Opportunity at MSK! Our Pathology and Laboratory Medicine Department is looking for a Bioinformatics Software Engineer to join a dynamic team supporting state‑of‑the‑art molecular diagnostics and cancer genomics programs. You will play a key role in developing software tools, web applications, and data workflows that empower our clinicians and researchers to interpret complex genomic information and advance precision oncology.

Role Overview

Build web applications and APIs that enable genomic data visualization and clinical reporting

Collaborate closely with bioinformaticians, laboratory scientists, researchers, and clinicians to translate workflow needs into robust software solutions

Develop, optimize, and maintain computational workflows for NGS data processing

Improve performance, scalability, and reliability of existing pipelines and tools

Ensure data quality, reproducibility, and proper documentation across all projects

Key Qualifications

BS in Bioinformatics, Computer Science, or related field + 5 years of experience OR MS in Bioinformatics, Computer Science, or related field + 2 years of experience

Strong programming skills in Python

Experience in web development (e.g., Flask, Django, React)

Experience with relational databases (PostgreSQL, MySQL) and/or NoSQL (MongoDB)

Hands-on experience with containerization (Docker, Kubernetes)

Familiarity with version control (Git/GitHub) and CI/CD workflows

Understanding of NGS data analysis workflows

Strong debugging, analytical, and problem-solving skills

Preferred:

Experience with cloud computing (AWS, GCP, or Azure)

Knowledge of cancer genomics, variant calling, and annotation

Core Skills

Ability to translate scientific and clinical needs into maintainable, well‑designed software

Strong communication skills and comfort collaborating with multidisciplinary teams

Ability to work in fast‑paced research and clinical environments

Commitment to reproducible, traceable, and well‑documented work

Additional Information

Schedule: hybrid, at least 2 days a week in office, must reside in the NYC metro area

Location: Joy Building, 321 E 61st Street, NYC

Reporting to: Manager, Bioinformatics Pathology and Laboratory Medicine

Helpful Links:

Compensation Philosophy
Benefits

Pay Range: $100,600.00 - $161,000.00

FSLA Status: Exempt

Closing:

At MSK, we believe in fair, competitive pay that reflects your job, experience, and skills.

MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.

Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.

Application Process

01
Step 1:

Complete an Online Application
02
Step 2:

Interview Process
03
Step 3:

Provide References
04
Step 4:

Extension of Job Offer
05
Step 5:

Onboarding
06
Step 6:

New Employee Orientation

Apply Now

Refine Your Search

bioinformatics software engineer jobs in new york ny

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Bioinformatics Engineer II (Remote/East Coast)

AI/ML Engineer - Vaccines Modeling and Antigen Discovery

Lead Bioinformatics Engineer

Lead PHP Engineer (Laravel) - Remote

Staff Engineer - ML Operations - USA Remote

Linux (DevOps) Engineer| Information Technology

Pipeline Verification & Validation Manager.

Postdoctoral Associate | Vertebrate Genome Laboratory

Other jobs to consider

I want to receive the latest job alert for bioinformatics software engineer in new york ny

Explore jobs in more locations

Job details

Application Process

Job Seeker Tools

Employer Tools

Browse

Stay Connected