Top 91 Bioinformatics scientist Jobs in Alameda, Ca

Part-Time Bioinformatics Scientist (Contract/Consultant)
GeneGenieDx —Pleasanton, CA
- $50 - $85 an hour
- Remote
- Doctor of Philosophy
- Quality control
- Senior level
Quick Apply
Bioinformatics Scientist
Predicine, Inc —Hayward, CA
- $149,000 a year
- Email
- Doctoral degree
- 3 years
- Master's degree
Quick Apply
3d
Bioinformatics Scientist
Thermo Fisher Scientific —Pleasanton, CA
- $82,800 - $95,000 a year
- Full-time
- Background check
- Computer Science
- Bachelor of Science
- Commuter assistance
- Paid parental leave
8d
BIOINFORMATICS PROGR
University of California San Francisco —San Francisco, CA
- Mid-level
- 3 years
- University
Junior/Assistant/Associate/Full Specialist - Biological Science - Advanced Bioimaging Center - Department of Molecular and Cell Biology
University of California Berkeley —Berkeley, CA
- $55,000 - $194,800 a year
- Online Application
- Computer Science
- System design
- Analysis skills
14d
Bioinformatics Scientist (Discovery Biology)
Neurona Therapeutics —South San Francisco, CA
- $133,000 - $155,000 a year
- Computer Science
- 3 years
- Analysis skills
Quick Apply
Bioinformatics Programmer 3
University of California San Francisco —San Francisco, CA
- Mid-level
- 3 years
- Analysis skills
Bioinformatics Engineer
Teiko —San Mateo, CA
- Full-time
- Azure
- Computer Science
- Master's degree
Quick Apply
Assistant/Associate/ Full Specialist on Bioinformatics/ Computational Biology study selective vulnerability in human neurodegenerative diseases
UC San Francisco Academic —San Francisco, CA
- $61,300 - $188,200 a year
- Online Application
- Computer science
- Computer Science
- Mid-level
Scientific Evals
Edison Scientific —San Francisco, CA
- $160,000 - $300,000 a year
- Full-time
- Psychiatry
- Office
- Analysis skills
- Commuter assistance
- Paid parental leave
BIOINFORMATICS SPECIALIST (JUNIOR, ASSISTANT, ASSOCIATE, or FULL Rank) - ULLIAN LAB
UC San Francisco Academic —San Francisco, CA
- $55,000 - $194,800 a year
- Online Application
- Doctoral degree
- 3 years
- Master's degree
Staff Scientist, Bioinformatics
Thermo Fisher Scientific —Pleasanton, CA
- $129,400 - $175,000 a year
- Full-time
- Background check
- Computer Science
- Pass drug screening
- Commuter assistance
- Paid parental leave
Life Science Research Professional 1 (FTE: 50%)
Stanford University —Stanford, CA
- Part-time
- Computer literacy
- Maintenance
- Mid-level
- Health insurance
- Dental insurance
1d
Senior Bioinformatics Scientist
PromptBio Inc. —Pleasanton, CA
- $140,000 - $180,000 a year
- Full-time
- 3 years
- Doctor of Philosophy
- Senior level
- Health insurance
- Dental insurance
Quick Apply
Quigley Lab - Bioinformatics Specialist
UC San Francisco Academic —San Francisco, CA
- $55,000 - $70,700 a year
- Online Application
- Bachelor of Science
- Mid-level
- 3 years
Data Scientist
University of California San Francisco —San Francisco, CA
- Full-time
- Azure
- Computer Science
- Mid-level
Bioinformatics Analyst
Centrillion Technologies, Inc. —Palo Alto, CA
- $65,000 - $90,000 a year
- Multiple hires
- Computer Science
- Bachelor of Science
- Mid-level
- Health insurance
2d
Scientist/Engineer, Machine Learning / Bioinformatics
Moonwalk Biosciences, Inc. —South San Francisco, CA
- $130,000 - $173,000 a year
- Full-time
- Computer Science
- 3 years
- Doctor of Philosophy
Quick Apply
Senior Bioinformatics Scientist
CEDENT —South San Francisco, CA
- 3 years
- Master's degree
- SQL
Staff Scientist II, Target Discovery, Screening, and Automation
Protagonist Therapeutics —Newark, CA
- $135,000 - $145,000 a year
- Mid-level
- AWS
- Doctor of Philosophy
Quick Apply

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Part-Time Bioinformatics Scientist (Contract/Consultant)

GeneGenieDx
Pleasanton, CA

Quick Apply

Job Details

Internship
$50 - $85 an hour

Qualifications

Next generation sequencing
Doctor of Philosophy

Full Job Description

Company Description

Located in the San Francisco Bay Area, El Capitan Biosciences comprises a team of passionate, versatile, and seasoned professionals. Our team's extensive research and industry backgrounds enable us to stay at the forefront of innovation.

At El Capitan Biosciences (ECB), our mission is to advance noninvasive diagnostics and monitoring by harnessing advanced machine learning algorithms and proprietary molecular methods to extract, quantify and interpret human RNA present in stool. By enabling whole transcriptome-sequencing of human transcripts shed from gut and immune cell populations, we aim to discover clinically meaningful biomarkers that reflect mucosal integrity, presence of disease, inflammatory activity and broader gastrointestinal health. Our multiplex RNA-based panels integrate signals across multiple pathways to deliver a comprehensive, actionable picture of disease biology, supporting improved diagnosis, monitoring, and overall understanding of gut health.

Company website: https://elcapitanbio.com/

Why Join Us

Opportunity to help shape the commercial direction of a novel platform technology
Direct impact on partnerships with leading pharma and diagnostics organizations
Collaborative, science-driven startup environment

Job Description

Position Overview

We are seeking a highly skilled Part-Time Bioinformatics Scientist to support RNA-seq data analysis and machine learning model development for biomarker discovery and clinical diagnostics. This is a flexible role ideal for individuals seeking to contribute to cutting-edge translational genomics projects on a part-time basis.

Key Responsibilities

Analyze RNA-seq datasets, including preprocessing, QC, normalization, and differential expression analysis
Develop and maintain bioinformatics pipelines for transcriptomic data
Apply statistical and machine learning methods to identify diagnostic or predictive biomarkers
Build and evaluate predictive models, including deep learning approaches
Explore applications of large language models (LLMs) or multimodal AI in biological data analysis
Collaborate with cross-functional teams to interpret results and guide experimental design
Communicate findings through reports, visualizations, and presentations

Qualifications

Basic Qualifications

PhD candidate or PhD degree in Bioinformatics, Computational Biology, Biology, or a related field
Hands-on experience with RNA-seq data analysis
Strong programming skills in R and/or Python
Familiarity with Linux/Unix environments and proficiency in bash scripting
Formal training in statistics and machine learning

Preferred Qualifications

Experience with machine learning frameworks (e.g., scikit-learn, TensorFlow, PyTorch)
Experience developing or applying deep learning models
Familiarity with large language models (LLMs) or generative AI applications in biology
Experience with NGS pipelines and tools (e.g., STAR, Salmon, nf-core, etc.)
Experience working in high-performance computing (HPC) or cloud environments
Strong data visualization and communication skills

Additional Information

What You’ll Gain

Opportunity to work on cutting-edge RNA-seq datasets from clinical samples
Exposure to real-world biomarker discovery and diagnostic development
Flexible, part-time engagement with meaningful scientific impact
Collaboration with a highly experienced, multidisciplinary team

Quick Apply

Refine Your Search

bioinformatics scientist jobs in alameda, ca

Part-Time Bioinformatics Scientist (Contract/Consultant)

Bioinformatics Scientist

Bioinformatics Scientist

BIOINFORMATICS PROGR

Junior/Assistant/Associate/Full Specialist - Biological Science - Advanced Bioimaging Center - Department of Molecular and Cell Biology

Bioinformatics Scientist (Discovery Biology)

Bioinformatics Programmer 3

Bioinformatics Engineer

Assistant/Associate/ Full Specialist on Bioinformatics/ Computational Biology study selective vulnerability in human neurodegenerative diseases

Scientific Evals

BIOINFORMATICS SPECIALIST (JUNIOR, ASSISTANT, ASSOCIATE, or FULL Rank) - ULLIAN LAB

Staff Scientist, Bioinformatics

Life Science Research Professional 1 (FTE: 50%)

Senior Bioinformatics Scientist

Quigley Lab - Bioinformatics Specialist

Data Scientist

Bioinformatics Analyst

Scientist/Engineer, Machine Learning / Bioinformatics

Senior Bioinformatics Scientist

Staff Scientist II, Target Discovery, Screening, and Automation

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