Top 12 Bioinformatics scientist Jobs in Pennsylvania

Bioinformatics Scientist II
Children’s Hospital of Philadelphia —Philadelphia, PA
- $101,300 - $129,100 a year
- Full-time
- Hybrid work
- Azure
- Software troubleshooting
- Mid-level
Quick Apply
Data Analyst (Department of Radiology)
University of Pennsylvania —Philadelphia, PA
- $62,067 - $80,000 a year
- Full-time
- Background check
- Computer Science
- Mid-level
- Health insurance
- Dental insurance
Bioinformatician A/B
University of Pennsylvania —Philadelphia, PA
- $57,500.00 - $101,200.50 a year
- Full-time
- Background check
- Mid-level
- 3 years
- Health insurance
- Dental insurance
Bioinformatics Staff Scientist at NSF-NCEMS
Penn State University —University Park, PA
- $65,508 - $122,016 a year
- Online Application
- Hybrid work
- Background check
- Computer Science
- Analysis skills
- Paid holidays
- Health insurance
Research Programmer
University of Pennsylvania —Philadelphia, PA
- $61,000 - $73,581 a year
- Full-time
- Background check
- Computer Science
- Bachelor of Science
- Health insurance
- Dental insurance
Post-Doctoral Fellow (Computational Biology) – Srivastava Lab
Wistar —Philadelphia, PA
- Full-time
- Computer Science
- Doctor of Philosophy
- Linux
14h
Research Data Scientist - Molecular and Precision Medicine / Medicine
Penn State University —University Park, PA
- $91,488 - $137,280 a year
- Online Application
- Background check
- 6 years
- Computer Science
- Paid holidays
- Health insurance
Imaging Data Scientist III
Children’s Hospital of Philadelphia —Philadelphia, PA
- $129,700 - $171,900 a year
- Full-time
- Computer Science
- Master's degree
- AWS
Quick Apply
Machine Learning Staff Scientist at NSF-NCEMS
Penn State University —University Park, PA
- $65,508 - $122,016 a year
- Online Application
- Hybrid work
- Background check
- Computer Science
- University
- Paid holidays
- Health insurance
Applied AI Engineer
GlaxoSmithKline —Upper Providence, PA
- $136,125 - $226,875 a year
- Full-time
- Azure
- Computer Science
- Master's degree
- Paid holidays
- Health insurance

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Develops algorithms and computational tools for research and clinical genomics data analysis. PhD in Bioinformatics, Computational Biology, Computer Science,…
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The Research Scientist will develop hypotheses and analytical strategies; establish and optimize reproducible bioinformatic workflows; oversee data processing,…
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Bioinformatics Scientist II

Children’s Hospital of Philadelphia -
Philadelphia, PA

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Job Details

Full-time
$101,300 - $129,100 a year

Qualifications

Clinical data analysis
Bioinformatics data analysis

Full Job Description

SHIFT:

Day (United States of America)

Seeking Breakthrough Makers

Children’s Hospital of Philadelphia (CHOP) offers countless ways to change lives. Our diverse community of more than 20,000 Breakthrough Makers will inspire you to pursue passions, develop expertise, and drive innovation.

At CHOP, your experience is valued; your voice is heard; and your contributions make a difference for patients and families. Join us as we build on our promise to advance pediatric care—and your career.

A Brief Overview

The Genomic Diagnostic Laboratory (GDL) of the Children’s Hospital of Philadelphia is seeking a highly motivated Bioinformatics Scientist II with an interest in laboratory diagnostics to join our team. This is an exciting opportunity to work collaboratively within the bioinformatics team and together with our laboratory directors, supervisors, analysts, genetic counselors, and wet bench team to develop and improve pipelines and other tools to support accurate, timely diagnostic testing that has a direct impact on establishing the diagnosis, prognosis, treatment, and management plan for our patients. The team also supports cutting edge R&D efforts including new clinical test development and clinical research. The ability to communicate in a highly matrixed environment will be key to the candidate’s success. Seasoned professionals as well as new graduates are welcome to apply and will be considered for the career ladder position commensurate with their experience. This position is hybrid with weekly onsite work at our Philadelphia campus as appropriate.

The Bioinformatics Scientist II is primarily focused on developing and validating frameworks and algorithms supporting clinical diagnostic tests as a bioinformatics domain expert. The scope of the work will include the development and improvement of bioinformatics workflows and processes, bioinformatics pipeline QC and troubleshooting, as well as presentation of results for multi-omics-based tests. The position allows for a wide variety of activities described within the job responsibilities. Activities occur with a moderate degree of supervision with moderate latitude for independent judgment.

The ideal candidate will have experience in the following:

NGS analysis pipelines and applications, including SNV, copy number variation, structure variation, and RNAseq, including filtering, annotation, and prioritization
Machine learning and data modeling of genomic data
Deep knowledge in Illumina short read technology:
a) Instrumentation and the molecular biology/biochemistry
b) Dragen workflow
Familiarity with resources of genomic data sets, data bases, and tools, such as UCSC Genome Browser, gnomAD, HGMD, ClinVar, OMIM, ACMG, and various NCBI databases
Strong skills in Python and related ML and mathematical libraries
UNIX/GNU/Linux
GitHub

What you will do

Coding and Software Development (40%):
CI/CD development of bioinformatics pipelines, applying best practices
Review existing applications and code sources (both commercial and free/open source) and select the best strategy for development or adoption.
Routine peer-to-peer code reviews
Analysis (30%):
Analyze high complexity genomics data
Contribute to the development of additional pipeline functionality and changes by providing knowledge of both collaboration-specific requirements and bioinformatics discipline advances.
Advocate for specific collaboration requirements for continual advancement of shared pipeline and code resources
Provide collaboration-specific transparency for data processing and pre-analysis, including sample- and cohort-level status.
Collaboration (20%)
Contribute to the development of application portfolio by developing knowledge of internally developed systems, open-source programs, and commercial applications
Provide efficient data management support
Establish role within collaborative project team as primary bioinformatics resource
Contribute to and influence project-level management by serving as bioinformatics point.
Define and promote boundaries of support by assessing all stakeholders, including bioinformatics management, collaborator expectations, and funding levels and mechanisms.
Regularly discuss satisfaction and expectations with collaborators; continually advocate for clear understanding of role.
Academic Output (10%)
Regularly contribute to bioinformatics-focused manuscripts and publications.
Regularly contribute to podium presentations and posters.
Contribute to bioinformatics sections of grant and award proposals.

Education Qualifications

Bachelor's Degree - Required
Bachelor's Degree in Bioinformatics, Data Science, Engineering or related fields - Preferred
Master's Degree in Bioinformatics, Data Science, Engineering or related field - Preferred

Experience Qualifications

At least three (3) years experience in applied bioinformatics, genomics, and computational work - Required
Experience with management and analysis of complex data types - Required
Scripting and application development in R - Preferred
Knowledge in long read technology, such as PacBio or ONT - Preferred
HPC job scheduler, e.g., Slurm or Airflow - Preferred
Pipeline implementation in cloud environment such as AWS, Azure, or Google VPC - Preferred
Bioinformatics pipeline or workflow development frameworks, e.g. WDL, CWL, SnakeMake, or NextFlow - Preferred
Knowledge of the working mechanism of microarray, protein mass spectrometry, or other high-throughput technologies and awareness of their strengths and weaknesses - Preferred
Experience or knowledge of technologies commonly used in biological labs, such as PCR, cloning, electrophoresis gels, and cell culture - Preferred

Skills and Abilities

Ability to interact with biologists and clinicians during a scientific discussion
Accountability and attention to timelines
Excellent organization and communication skills with an emphasis on strong presentation skills
Ability to provide objective validation of results
Ability to work in a team environment

To carry out its mission, CHOP is committed to supporting the health of our patients, families, workforce, and global community. As a condition of employment, professionals working onsite—at any CHOP location, for any portion of time—must be vaccinated for COVID-19. Learn more.

EEO / VEVRAA Federal Contractor | Tobacco Statement

SALARY RANGE:

$101,300.00 - $129,100.00 Annually

Salary ranges are shown for full-time jobs. If you're working part-time, your pay will be adjusted accordingly.

At CHOP, we are committed to fair and transparent pay practices. Factors such as skills and experience could result in an offer above the salary range noted in this job posting. Click here for more information regarding CHOP's Compensation and Benefits.

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Refine Your Search

bioinformatics scientist jobs in pennsylvania

Bioinformatics Scientist II

Data Analyst (Department of Radiology)

Bioinformatician A/B

Bioinformatics Staff Scientist at NSF-NCEMS

Research Programmer

Post-Doctoral Fellow (Computational Biology) – Srivastava Lab

Research Data Scientist - Molecular and Precision Medicine / Medicine

Imaging Data Scientist III

Machine Learning Staff Scientist at NSF-NCEMS

Applied AI Engineer

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Coding and Software Development (40%):

Analysis (30%):

Collaboration (20%)

Academic Output (10%)

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