Top 34 Bioinformatics Jobs in Philadelphia, Pa

Senior Bioinformatics Data Engineer
Kaztronix —Wilmington, DE
- Contract
- Remote
- Background check
- Computer Science
- 5 years
Quick Apply
Bioinformatics Scientist II
Children’s Hospital of Philadelphia —Philadelphia, PA
- $101,300 - $129,100 a year
- Full-time
- Hybrid work
- Azure
- Software troubleshooting
- Mid-level
Quick Apply
Staff Scientist in Translational Bioinformatics
Children’s Hospital of Philadelphia —Philadelphia, PA
- $101,300 - $129,100 a year
- Full-time
- Computer Science
- 5 years
- Master's degree
- Work from home
Quick Apply
12d
Bioinformatician A
University of Pennsylvania —Philadelphia, PA
- $57,500 - $77,716 a year
- Full-time
- Background check
- Bachelor of Science
- Mid-level
- Health insurance
- Dental insurance
Data Analyst (Department of Radiology)
University of Pennsylvania —Philadelphia, PA
- $62,067 - $80,000 a year
- Full-time
- Background check
- Computer Science
- Mid-level
- Health insurance
- Dental insurance
Computational Biologist
Thomas Jefferson University and Hospitals —Philadelphia, PA
- Full-time
- Computer Science
- Mid-level
- 3 years
- AD&D insurance
- Disability insurance
6d
Research Assistant (Computational Biology) – Srivastava Lab
Wistar —Philadelphia, PA
- Full-time
- Computer Science
- Master's degree
- Databases
Bioinformatician A/B
University of Pennsylvania —Philadelphia, PA
- $57,500.00 - $101,200.50 a year
- Full-time
- Background check
- Mid-level
- 3 years
- Health insurance
- Dental insurance
Bioinformation B
University of Pennsylvania —Philadelphia, PA
- $67,155 - $101,500 a year
- Full-time
- Background check
- Computer Science
- Mid-level
- Health insurance
- Dental insurance
Research Specialist A (Department of Microbiology)
University of Pennsylvania —Philadelphia, PA
- $44,500 - $50,000 a year
- Full-time
- Background check
- Bachelor of Science
- Maintenance
- Health insurance
- Dental insurance
Research Programmer
University of Pennsylvania —Philadelphia, PA
- $61,000 - $73,581 a year
- Full-time
- Background check
- Computer Science
- Bachelor of Science
- Health insurance
- Dental insurance
Statistical Analyst/Programmer
Temple University —Philadelphia, PA
- $75,000 - $85,000 a year
- Full-time
- Hybrid work
- Microsoft Access
- Mid-level
- Microsoft Office
- Paid holidays
- Health insurance
Research Specialist A/B
University of Pennsylvania —Philadelphia, PA
- $45,278.00 - $57,335.40 a year
- Full-time
- Background check
- Bachelor of Science
- Mid-level
- Health insurance
- Dental insurance
Senior Application Developer (Institute for Biomedical Informatics)
University of Pennsylvania —Philadelphia, PA
- $83,500 - $95,000 a year
- Full-time
- Background check
- Computer Science
- System design
- Health insurance
- Dental insurance
Research Specialist A/B (Department of Biochemistry and Biophysics)
University of Pennsylvania —Philadelphia, PA
- $44,500.00 - $57,335.40 a year
- Full-time
- Background check
- Bachelor of Science
- University
- Health insurance
- Dental insurance
Research Specialist C/D (Department of Rheumatology)
University of Pennsylvania —Philadelphia, PA
- $57,500 - $76,973 a year
- Full-time
- Background check
- Bachelor of Science
- Mid-level
- Health insurance
- Dental insurance
Research Post Doctoral Fellow - Qian Lab
Children’s Hospital of Philadelphia —Philadelphia, PA
- $20,800 - $110,400 a year
- Full-time
- Management
- Doctoral degree
- Children
Quick Apply
CTSA Director of Scientific Integration
University of Pennsylvania —Philadelphia, PA
- $112,433 - $130,000 a year
- Full-time
- Hybrid work
- Background check
- 5 years
- Bachelor of Science
- Health insurance
- Dental insurance
6d
Faculty Positions - HIV Cure and Viral Diseases Center
Wistar —Philadelphia, PA
- Full-time
- Children
- Senior level
Research Postdoctoral Fellow - Craniofacial Development and Gene Therapy
Children’s Hospital of Philadelphia —Philadelphia, PA
- $20,800 - $110,400 a year
- Full-time
- Management
- Doctoral degree
- Children
Quick Apply

I want to receive the latest job alert for bioinformatics in philadelphia, pa

By signing in to your account, you agree to SimplyHired's Terms of Service and consent to our Cookie and Privacy Policy.

Explore jobs in more locations

bioinformatics jobs near philadelphia, pa

Research Specialist jobs in Philadelphia, PA

Bioinformatician jobs in Philadelphia, PA

Director jobs in Philadelphia, PA

Bioinformatics Scientist jobs in Philadelphia, PA

Research Assistant jobs in Philadelphia, PA

Postdoctoral Research Fellow jobs in Philadelphia, PA

Biologist jobs in Philadelphia, PA

Data Analyst jobs in Philadelphia, PA

Staff Scientist jobs in Philadelphia, PA

Statistical Analyst jobs in Philadelphia, PA

Programmer jobs in Philadelphia, PA

Senior Application Developer jobs in Philadelphia, PA

Postdoctoral Fellow jobs in Philadelphia, PA

Faculty jobs in Philadelphia, PA

Research Specialist jobs in New Mexico

Research Specialist jobs in South Carolina

Per Diem Research Assistant jobs in Boston, MA

Research Specialist jobs in San Francisco, CA

Research Specialist jobs in Wisconsin

Bioinformatician jobs in Jacksonville, FL

Senior Bioinformatics Data Engineer

Kaztronix -
Wilmington, DE

Quick Apply

Job Details

Contract

Qualifications

Data integrity assurance
Commercial use (data warehousing systems)
Data Integration (Data management)
Data validation techniques
R
Process design
Schema design
SQL
Data Architecture Design (Architecture design skills)
ETL process automation
Data integrity process (data warehousing)
Application design
S3
AI-driven automation
Pair programming
Technical architecture
Python
Statistical analysis tools
Database software proficiency
VPN

Full Job Description

Job Summary

We are seeking a Data/Platform Engineer to accelerate a biomarker data lake modernization within Computational Discovery. The project replaces a fragmented ETL landscape with a unified AWS-native platform: Dagster orchestration, dbt transformations, Iceberg Bronze/Silver on S3, and Redshift Gold serving downstream AI and visualization consumers. Core infrastructure is live; this role provides the engineering capacity to drive real data through production pipelines across multiple oncology clinical studies. The successful candidate will embed as a technical partner with the lead engineer, working across the full stack from vendor ingestion through gold-layer delivery. This is a hands-on role that demands strong data quality instincts, a drive to automate repetitive workflows, and the ability to build scalable processes around AI-assisted development.

Key Responsibilities

Build and maintain Dagster-orchestrated ingestion pipelines for genomics vendors (Caris, Predicine, Tempus, Olink, CellCarta), including IO managers, Iceberg writers, and row-level accounting.
Develop and harden dbt Silver-to-Gold transformations: real-data test coverage, store-failures patterns, staging/intermediate/mart models, and macro consolidation.
Implement clinical data ingestion paths (SDTM and ADaM), reconciliation logic, and subject-dimension routing.
Deliver platform infrastructure: FastAPI endpoints, CI/CD pipelines, containerized deployments, observability instrumentation, and Redshift performance tuning.
Extract transformation rules from legacy R and PySpark code and reconcile against new platform implementations.
Identify repetitive processes and convert them into automated workflows, guardrails, or reusable tooling.
Participate in adversarial design and code reviews, identifying edge cases and pushing back on suboptimal patterns.
Collaborate with the lead engineer on design decisions and jointly own delivery velocity through paired working sessions and PR reviews.
Ensure all work meets reproducibility standards: CI on every PR, automated tests, no ad-hoc notebook-based production processes.

Minimum Qualifications

AI-native engineering practice: demonstrated experience building systems and workflows around AI coding agents (Claude Code, Cursor, Codex, or equivalent) - not just prompting them. You recognize when a repeated process should become an automated pipeline, when agent output needs guardrails, and when to build infrastructure that makes future work faster. Surface-level tool usage is insufficient.
Education: Bachelor's or master's degree in computer science, Data Engineering, Bioinformatics, or related field.
Experience: 5+ years of professional experience in data engineering with shipped production pipelines on AWS (S3, ECS/Fargate, Redshift or equivalent MPP).
Strong proficiency in Python and SQL with working knowledge of modern data engineering libraries.
Advanced proficiency with dbt and a workflow orchestration tool (Dagster, Airflow, or Prefect).
Data quality instinct: track record of catching silent failures, questioning data correctness assumptions, and noticing lossy joins or incomplete deliveries.
Solid understanding of lakehouse architecture patterns, ETL processes, and schema design for complex multi-modal datasets.
Ability to handle PHI-adjacent clinical data under contractor policy (background check, compliance training, VPN access).
Willingness to work within legacy codebases (R, PySpark) to extract business rules and validate new implementations.
Excellent communication skills and ability to work in an embedded pair model with tight feedback loops.

Preferred Qualifications

Direct experience with Apache Iceberg, AWS Glue Catalog, or lakehouse table formats.
Comfort reading genomic data (VAF, HGVS nomenclature, VCFs, CNV/fusion semantics) or demonstrated ability to ramp on unfamiliar scientific domains quickly.
Familiarity with clinical data standards including SDTM, ADaM, and CDISC.
Pharma, clinical research, or life sciences background.
Experience with containerization (Docker/ECS) and infrastructure-as-code (CloudFormation).
Proficiency in R for interoperability with bioinformatics teams.

Kaztronix is an equal opportunity employer and does not discriminate on the basis of race, color, national origin, sex, age, religion, disability, veteran status or any other consideration made unlawful by federal, state or local laws. In addition, all human resource actions in such areas as compensation, employee benefits, transfers, layoffs, training and development are to be administered objectively, without regard to race, color, religion, age, sex, national origin, disability, veteran status or any other consideration made unlawful by federal, state or local laws.

By applying to the position, you acknowledge that your information will be used by Kaztronix in processing your application.

Quick Apply

Refine Your Search

bioinformatics jobs in philadelphia, pa

Senior Bioinformatics Data Engineer

Bioinformatics Scientist II

Staff Scientist in Translational Bioinformatics

Bioinformatician A

Data Analyst (Department of Radiology)

Computational Biologist

Research Assistant (Computational Biology) – Srivastava Lab

Bioinformatician A/B

Bioinformation B

Research Specialist A (Department of Microbiology)

Research Programmer

Statistical Analyst/Programmer

Research Specialist A/B

Senior Application Developer (Institute for Biomedical Informatics)

Research Specialist A/B (Department of Biochemistry and Biophysics)

Research Specialist C/D (Department of Rheumatology)

Research Post Doctoral Fellow - Qian Lab

CTSA Director of Scientific Integration

Faculty Positions - HIV Cure and Viral Diseases Center

Research Postdoctoral Fellow - Craniofacial Development and Gene Therapy

I want to receive the latest job alert for bioinformatics in philadelphia, pa

Related Searches

Explore jobs in more locations

Job Summary

Key Responsibilities

Minimum Qualifications

Preferred Qualifications

Job Seeker Tools

Employer Tools

Browse

Stay Connected