Top 67 Computational chemists & biologists Jobs in Pleasanton, Ca

Computational Biologist
Transcripta Bio —Palo Alto, CA
- 3 years
- AWS
- Doctor of Philosophy
10d
Bioinformatics Research Associate (3 Month Contract)
SeqMatic, LLC —Fremont, CA
- $45 - $55 an hour
- Contract
- Bachelor of Science
- Mid-level
- Java
Quick Apply
Bioinformatician 2 – Computational Spatial Biology
Stanford University —Stanford, CA
- $108,002 - $128,138 a year
- Full-time
- Computer Science
- Mid-level
- Microsoft Office
Research Scientist - Computational Chemistry
Monarch —Oakland, CA
- $150,000 - $185,000 a year
- Full-time
- 7 years
- Doctor of Philosophy
- Senior level
Quick Apply
Staff Computational Chemistry/MD Engineer
Lam Research —Fremont, CA
- $141,000 - $307,000 a year
- 5 years
- Data analysis skills
- Analysis skills
Bioinformatics Scientist
Thermo Fisher Scientific —Pleasanton, CA
- $82,800 - $95,000 a year
- Full-time
- Background check
- Computer Science
- Bachelor of Science
- Commuter assistance
- Paid parental leave
Biological Data Curation Scientist (Remote, Half Time, US-based, US employment eligible only)
Phoenix Bioinformatics —Newark, CA
- $70,000 a year
- Part-time
- Remote
- Doctor of Philosophy
- US work authorization
- Python
- Health insurance
- 401(k) matching
Quick Apply
11d
Research Data Analyst 2
Stanford University —Stanford, CA
- $108,002 - $128,138 a year
- Full-time
- Computer Science
- Mid-level
- 3 years
Bioinformatics Analyst
Centrillion Technologies, Inc. —Palo Alto, CA
- $65,000 - $90,000 a year
- Multiple hires
- Computer Science
- Bachelor of Science
- Mid-level
- Health insurance
Part-Time Bioinformatics Scientist (Contract/Consultant)
GeneGenieDx —Pleasanton, CA
- $50 - $85 an hour
- Remote
- Doctor of Philosophy
- Quality control
- Senior level
Quick Apply
Bioinformatics Scientist
Tempus —Redwood City, CA
- $100,000 - $140,000 a year
- Full-time
- Computer science
- Computer Science
- 3 years
- Health insurance
Staff Scientist, Bioinformatics
Thermo Fisher Scientific —Pleasanton, CA
- $129,400 - $172,500 a year
- Full-time
- Background check
- 6 years
- Pass drug screening
- Commuter assistance
- Paid parental leave
1d
Computational design of biological experiments for model development
Inceptive —Palo Alto, CA
- $135,000 - $240,000 a year
- Office
- 3 years
- Doctor of Philosophy
- Health insurance
- 401(k) matching
Research Scientist Graduate (Seed Quantum Chemistry and Machine Learning) - 2027 Start (PhD)
ByteDance —San Jose, CA
- $162,000 - $316,800 a year
- Math
- Doctor of Philosophy
- Fair chance
- Paid parental leave
- Paid holidays
4d
Research Scientist - Quantum Chemistry - Global Frontier Tech Recruitment Program - 2027 Start (PhD)
ByteDance —San Jose, CA
- $218,400 - $480,000 a year
- Computer Science
- Math
- Doctor of Philosophy
- Paid parental leave
- Paid holidays
Biostatistician 2
Stanford University —Stanford, CA
- $115,103 - $134,261 a year
- Extended hours
- Hybrid work
- 3 years
- Master's degree
- Analysis skills
Senior Bioinformatics Scientist
PromptBio Inc. —Pleasanton, CA
- $140,000 - $180,000 a year
- Full-time
- 3 years
- Doctor of Philosophy
- Senior level
- Health insurance
- Dental insurance
Quick Apply
Principal Bioinformatics Scientist I
Roche —Santa Clara, CA
- $121,400 - $225,400 a year
- Online Application
- Master's degree
- C++
- Bachelor's degree
8d
Biostatistician
CliniOps —Fremont, CA
- Windows
- Analysis skills
- Linux
Biostatistician II
Karius —Redwood City, CA
- $117,446 - $176,168 a year
- Full-time
- Remote
- Mid-level
- 3 years
- Master's degree
Quick Apply
3d

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Computational Biologist

Transcripta Bio
Palo Alto, CA

Apply Now

Job Details

10 days ago

Qualifications

Next generation sequencing
Doctor of Philosophy
Quality control
Data-driven problem-solving
Linux
Dimensionality reduction
Bioinformatics data analysis
Data analysis software

Full Job Description

About Transcripta Bio

Transcripta Bio is a preclinical-stage AI drug discovery company pioneering a patient-first approach to therapeutics. Headquartered in Palo Alto, CA, we have built a proprietary closed-loop discovery engine - comprising our Disease Signature Atlas, Drug-Gene Atlas, and Conductor AI platform - that integrates single-cell patient transcriptomics, causal human genetics, and pre-validated chemistry to identify and advance drug candidates with a structural edge over conventional approaches.

WHAT YOU’LL DO

Develop, maintain, and optimize reproducible bioinformatics pipelines for processing, QC, and analysis of high-throughput datasets, including bulk RNA-seq, single-cell RNA-seq, and high-content imaging data.
Analyze data from drug perturbation screens to identify transcriptomic signatures, compound-gene associations, and patterns of drug response across disease-relevant cell models.
Integrate data across multiple experimental modalities (transcriptomics, imaging, protein measurements) to build a coherent picture of biology and prioritize therapeutic hypotheses.
Partner with wet lab scientists to help design experiments, define data standards, troubleshoot data quality issues, and ensure clean handoffs between experimental and computational workflows.
Contribute to the curation and expansion of the Drug-Gene Atlas: ensure that data inputs are well characterized, analysis methods are calibrated, and outputs are interpretable and reliable.
Communicate findings clearly through reports, visualizations, and presentations to both computational and non-computational colleagues.
Stay current with advances in transcriptomics, single-cell methods, and computational biology; evaluate and adopt new tools and approaches where they add value.
Contribute to code review, documentation, and best practices as the team grows.

WHAT YOU’LL BRING

PhD in Bioinformatics, Computational Biology, Genomics, or a related field with 3+ years of relevant experience in industry.
Extensive hands-on experience processing and analyzing bulk and/or single-cell RNA-seq data, from raw reads through QC, normalization, dimensionality reduction, clustering, and differential expression.
Experience in relevant scientific packages (e.g., scanpy, pandas, numpy, DESeq2, ggplot2) and comfort working in a Linux/command-line environment. Strong programming proficiency in Python and/or R is a plus
Experience building and running reproducible workflows using tools such as Snakemake, Nextflow, or equivalent; familiarity with version control (Git) and best practices for collaborative code development.
Exposure to high-throughput or perturbational screening datasets (chemical, genetic, or combined) is highly desirable.
A biologically grounded mindset: you approach data with mechanistic questions in mind, not just statistical outputs.

NICE TO HAVE

Experience analyzing data from functional genomics assays (e.g., ATAC-seq, ChIP-seq, perturb-seq, or pooled CRISPR screens).
Familiarity with spatial transcriptomics or multimodal data integration approaches.
Experience working with or alongside ML/AI teams; familiarity with applying machine learning methods to biological data.
Background in rare genetic disease, neurodegeneration, or other genetically defined disease areas.
Experience in cloud-based compute environments (AWS, GCP, or equivalent)

Apply Now

Refine Your Search

computational chemists & biologists jobs in pleasanton, ca

Computational Biologist

Bioinformatics Research Associate (3 Month Contract)

Bioinformatician 2 – Computational Spatial Biology

Research Scientist - Computational Chemistry

Staff Computational Chemistry/MD Engineer

Bioinformatics Scientist

Biological Data Curation Scientist (Remote, Half Time, US-based, US employment eligible only)

Research Data Analyst 2

Bioinformatics Analyst

Part-Time Bioinformatics Scientist (Contract/Consultant)

Bioinformatics Scientist

Staff Scientist, Bioinformatics

Computational design of biological experiments for model development

Research Scientist Graduate (Seed Quantum Chemistry and Machine Learning) - 2027 Start (PhD)

Research Scientist - Quantum Chemistry - Global Frontier Tech Recruitment Program - 2027 Start (PhD)

Biostatistician 2

Senior Bioinformatics Scientist

Principal Bioinformatics Scientist I

Biostatistician

Biostatistician II

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