Top 41 Nonprofit payroll Jobs in Remote

Nonprofit Accountant (Part-Time/Contract/Remote/U.S.-Based)
NonProfit Fiscal Management —New York, NY
- $40 - $55 an hour
- Part-time
- Remote
- Mid-level
- 3 years
- US work authorization
Payroll Specialist Sr
One Call —Remote
- $55,700 - $83,500 a year
- Full-time
- Research
- Finance
- Continuous improvement
- Disability insurance
- Health insurance
HR & Payroll Administrator (remote)
Human Services Research Institute —Cambridge, MA
- $57,200 - $75,000 a year
- Full-time
- Remote
- Mid-level
- 3 years
- Finance
- Paid holidays
- Disability insurance
Quick Apply
3d
Nonprofit Accountant
NonProfit Fiscal Management —New York, NY
- $80,000 - $90,000 a year
- Full-time
- Remote
- Mid-level
- Finance
- Bachelor's degree
- Disability insurance
- Health insurance
Manager, Payroll & Benefits
Reinvestment Fund —Philadelphia, PA
- $98,000 - $123,000 a year
- Remote
- Background check
- 5 years
- HIPAA
- Disability insurance
- Health insurance
3d
Sr. Manager, Global Payroll & HRIS
Pacvue —Remote
- $130,000 - $160,000 a year
- Remote
- Microsoft Excel
- 8 years
- Senior level
- Paid parental leave
- Health savings account
10d
Human Resources Manager-National-Damascus
Save the Children —Remote
- Overnight shift
- Up to 50% travel
- English
- Office
5d
VP, Payroll & HRIS Strategy
Covenant House International —New York, NY
- $130,000 - $150,000 a year
- Email
- Remote
- Customer service
- Office
- Master's degree
Director, Human Resources
Smart Electric Power Alliance —Remote
- $130,000 - $140,000 a year
- Remote
- Bachelor's degree
- Organizational skills
- Senior level
Senior HR Technology Analyst
The Y In Central Maryland —Remote
- $85,000 - $90,000 a year
- Full-time
- Remote
- Computer science
- Computer Science
- 5 years
- Health insurance
- Dental insurance
Quick Apply
Bookkeeper
VaVa Virtual Assistants —Remote
- Part-time
- Google Workspace
- HIPAA
- Mid-level
Staff Accountant
OptiPeople Resources —Chicago, IL
- $55,000 - $60,000 a year
- Full-time
- Remote
- Mid-level
- 3 years
- Analysis skills
1d
Senior Accountant
The Center for Action & Contemplation —Remote
- $69,610 - $86,588 a year
- Online Application
- Remote
- 5 years
- Salesforce
- Continuous improvement
- Relocation assistance
- Health insurance
Senior Accounting Manager
Mozilla —Remote
- $200,000 - $217,000 a year
- Remote
- 7 years
- CPA
- Analysis skills
4d
Corporate - Senior Accountant
Transforming Age HQ1 —Remote
- $70,000 - $85,000 a year
- Full-time
- CPA
- 5 years
- Bachelor of Science
- Health insurance
- Dental insurance
Senior Manager, Accounting Advisory - Nonprofit Industry Clients
Wipfli —Naperville, IL
- $151,000 - $203,000 a year
- Remote
- CPA
- Finance
- Master's degree
- Health savings account
- AD&D insurance
Accounting and Special Projects Manager
Auxilio Partners, Inc. —Remote
- Full-time
- Google Workspace
- CPA
- Office
Senior Accounting Consultant
Attain Partners —McLean, VA
- $120,000 - $140,000 a year
- Remote
- Word processing
- Mid-level
- Finance
- Health savings account
- Paid holidays
Quick Apply
Finance Coordinator (Goldbelt Heritage Foundation)
Goldbelt, Inc. —Juneau, AK
- $30.72 - $33.34 an hour
- Full-time
- Remote
- Mid-level
- Office
- Finance
13d
Accounting/Finance Manager
Digital Harbor Foundation —Remote
- $90,000 - $107,000 a year
- Overtime
- Oracle
- 3 years
- Master's degree
- Paid parental leave
- Health savings account
Quick Apply

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nonprofit payroll jobs near remote

Nonprofit Accountant (Part-Time/Contract/Remote/U.S.-Based)

NonProfit Fiscal Management
New York, NY

Apply Now

Job Details

Part-time | Contract
$40 - $55 an hour

Qualifications

Accounting systems
Nonprofit finance
Cloud-based systems
Budget restrictions for grants
Compliance reporting for grants
Financial services
Video conferences (communication methods)
Non-profit experience
Financial compliance in social service program administration
Audit support
Consulting firm experience
Financial compliance

Full Job Description

Description:

Title: Nonprofit Accountant (Part-Time/Remote/U.S.-Based)

Description:

NonProfit Fiscal Management (NPFM) is seeking an experienced nonprofit accountant to join our team on a part-time, hourly basis. This is a remote contract position ideal for a detail-oriented financial professional who understands the nuances of nonprofit accounting and enjoys working with mission-driven clients.

About Us:
NPFM provides outsourced financial management services to nonprofit organizations across the U.S. Our clients are at the forefront of social change—fighting for environmental justice, legal advocacy, housing access, and community empowerment. We serve as their accounting department, offering everything from bookkeeping to CFO-level reporting and strategy.

We are a fully remote, paperless team with a strong culture of communication, collaboration, and care. Over the past year, we’ve continued to grow steadily, expanding our client base and deepening our impact. As we move through 2026, we are building and maintaining a roster of skilled freelance accountants to support new client onboarding and ensure consistent, high-quality service delivery.

Role Overview:

As a Nonprofit Accountant, you’ll take primary responsibility for the day-to-day financial operations of one or more clients. You’ll be supported by our internal team and collaborate closely with client staff. Your work will help nonprofits manage their finances with confidence and clarity.

Contract Details:

Hourly Rate: $40–$55/hour depending on experience
Estimated Hours: 10–20 hours per week, with additional hours needed per quarter and yearly, with flexibility to grow.
Contract Type: Freelance/1099
Location: Remote (U.S. only)

Note:

As NPFM continues to grow, we are prioritizing candidates who are open to increasing hours over time or transitioning into full-time work. If that’s you, we’d love to know!

Requirements:

Key Responsibilities:

Manage monthly close processes, including reconciliations and journal entries
Prepare financial statements and funder-specific reports
Track restricted funding and grant allocations
Review transactional data (e.g., payroll, accounts payable) entered by client or support staff
Assist with audit preparation and annual budgeting
Meet with clients regularly via video conference calls and communicate clearly by email

Required Experience:

At least 3 years of nonprofit accounting experience
Strong understanding of restricted funds, funder compliance, and grant tracking
Ability to manage accounting for multiple clients or projects simultaneously
High comfort level with Excel and cloud-based accounting tools (we use MIP Fund Accounting and BILL, but experience with similar tools like QBO or Sage Intacct is helpful)
Highly organized, communicative, and detail-oriented
Based in and authorized to work in the U.S.
Experience in outsourced accounting or nonprofit financial consulting
Familiarity with audit processes and 990 preparation

Apply Now

Refine Your Search

nonprofit payroll jobs in remote

Nonprofit Accountant (Part-Time/Contract/Remote/U.S.-Based)

Payroll Specialist Sr

HR & Payroll Administrator (remote)

Nonprofit Accountant

Manager, Payroll & Benefits

Sr. Manager, Global Payroll & HRIS

Human Resources Manager-National-Damascus

VP, Payroll & HRIS Strategy

Director, Human Resources

Senior HR Technology Analyst

Bookkeeper

Staff Accountant

Senior Accountant

Senior Accounting Manager

Corporate - Senior Accountant

Senior Manager, Accounting Advisory - Nonprofit Industry Clients

Accounting and Special Projects Manager

Senior Accounting Consultant

Finance Coordinator (Goldbelt Heritage Foundation)

Accounting/Finance Manager

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