Top 5 Bioinformatics engineer Jobs in San Diego, Ca

Senior Staff Engineer/Scientist, Bioinformatics
Foresite Labs (Stealth Co) —San Diego, CA
- $202,000 - $215,000 a year
- Full-time
- 6 years
- Computer Science
- Doctor of Philosophy
Bioinformatics Pipeline Junior Test Engineer
Katalyst Healthcares & Life Sciences —San Diego, CA
- Contract
- Hybrid work
- Azure
- Computer Science
- Bachelor of Science
Quick Apply
Associate Director, Functional Genomics, Data Science
Merck —San Diego, CA
- $176,200 - $277,300 a year
- Full-time
- Computer Science
- System design
- AWS
- Paid holidays
- Health insurance
1d
Bioinformatics Pipeline Test Engineer
Katalyst Healthcares & Life Sciences —San Diego, CA
- Contract
- Hybrid work
- Azure
- Mid-level
- Communication skills
Quick Apply
Senior Engineer, Machine Learning
Element Biosciences —San Diego, CA
- $139,000 - $183,000 a year
- Full-time
- Computer Science
- Office
- Master's degree
- Health insurance
- Paid time off
Quick Apply

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Bioinformatics Pipeline Junior Test Engineer
Katalyst Healthcares & Life Sciences —San Diego, CA
B.S. Degree in Computational Biology, Computer Science, or field as outlined in the essential duties. Familiarity with bioinformatics analysis pipeline…
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bioinformatics engineer jobs near san diego, ca

Senior Staff Engineer/Scientist, Bioinformatics

Foresite Labs (Stealth Co)
San Diego, CA

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Job Details

Full-time
$202,000 - $215,000 a year

Qualifications

AI models
Statistics
Statistics
High-performance computing clusters
Statistical analysis for research
Programming languages
Machine intelligence
Doctor of Philosophy
Cloud development
Machine learning (ML) fundamentals
Bioinformatics data analysis

Full Job Description

Job Title: Senior Staff Engineer, Bioinformatics

Location: San Diego, CA

Job Type: Full-Time

Salary $202,000-$215,000

Position Overview

The Senior Staff Engineer, Bioinformatics will develop, advance, and support large-scale analysis of multi-omic data, through application of existing and novel methods. They will be responsible for developing scalable pipelines for cloud and HPC environments. The ideal candidate combines strong expertise in data science and software development, along with the ability to work cross-functionally with wet-lab and commercial teams.

Key Responsibilities

Analyze large-scale multi-omic data to delineate technical artifacts from biological signals.
Design and implement novel computational methods to improve signal detection and reduce compute costs.
Develop and maintain robust analysis pipelines.
Build and optimize reproducible workflows in cloud and HPC environments with attention to cost and scalability.
Identify and resolve technical artifacts through cohort-level and assay-aware analysis.
Partner with wet-lab scientists to diagnose and address assay artifacts.
Communicate findings clearly and contribute to technical decision-making.

Qualifications

Education:

Ph.D. in computational biology, computer science, statistics, genomics, or related field

Required:

6+ years of professional experience in bioinformatics or closely related roles.
Ability to distinguish biological signal from technical noise using a variety of statistical, machine learning and deep learning methodologies.
Proficiency in programming languages frequently used for both ad hoc and scalable production multi-omic analyses.
Experience developing reproducible workflows in cloud or HPC environments.

Preferred:

Experience optimizing compute costs at scale
Experience developing commercial products

Why Join Us

Work in a dynamic, collaborative environment where innovation and scientific rigor are deeply valued.
Join a seasoned and multidisciplinary team tackling high-impact problems at the intersection of science and engineering.
Competitive compensation and equity package, comprehensive benefits, and flexibility to support work-life integration.

We are an equal opportunity employer. We thrive on diversity and collaboration.

Compensation Range: $202K - $215K

Apply Now

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bioinformatics engineer jobs in san diego, ca

Senior Staff Engineer/Scientist, Bioinformatics

Bioinformatics Pipeline Junior Test Engineer

Associate Director, Functional Genomics, Data Science

Bioinformatics Pipeline Test Engineer

Senior Engineer, Machine Learning

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