Top 95 Bioinformatics scientist Jobs in San Mateo, Ca

Computational Scientist II - 30120_J
BEPC Inc —South San Francisco, CA
- $42.00 - $48.65 an hour
- Contract
- Azure
- Computer Science
- 5 years
- Health insurance
- Dental insurance
Quick Apply
11d
BIOINFORMATICS PROGR
University of California San Francisco —San Francisco, CA
- Mid-level
- 3 years
- University
Staff Scientist, Bioinformatics
Thermo Fisher Scientific —South San Francisco, CA
- $129,400 - $165,000 a year
- Full-time
- Background check
- 6 years
- Office
- Commuter assistance
- Paid parental leave
10d
Bioinformatics Programmer 3
University of California San Francisco —San Francisco, CA
- Mid-level
- 3 years
- Analysis skills
Scientific Evals
Edison Scientific —San Francisco, CA
- $160,000 - $300,000 a year
- Full-time
- Psychiatry
- Office
- Databases
- Commuter assistance
- Paid parental leave
Data Scientist
University of California San Francisco —San Francisco, CA
- Full-time
- Azure
- Computer Science
- Mid-level
14d
Bioinformatics Production Analyst/Production Engineer
Natera —San Francisco, CA
- $106,600 - $133,300 a year
- Remote
- Computer Science
- Mid-level
- Master's degree
- Commuter assistance
- Health insurance
14d
Bioinformatics Data Scientist II
Heluna Health —Richmond, CA
- $91,500 - $117,588 a year
- Weekends as needed
- Microsoft Excel
- Microsoft Outlook
- Computer Science
BIOINFORMATICS SPECIALIST (JUNIOR, ASSISTANT, ASSOCIATE, or FULL Rank) - ULLIAN LAB
UC San Francisco Academic —San Francisco, CA
- $55,000 - $194,800 a year
- Online Application
- Doctoral degree
- 3 years
- Master's degree
5d
Assistant/Associate/ Full Specialist on Bioinformatics/ Computational Biology study selective vulnerability in human neurodegenerative diseases
UC San Francisco Academic —San Francisco, CA
- $61,300 - $188,200 a year
- Online Application
- Computer science
- Computer Science
- Mid-level
Bioinformatics Engineer
Teiko —San Mateo, CA
- Full-time
- Azure
- Computer Science
- Master's degree
Quick Apply
Bioinformatics Scientist (Discovery Biology)
Neurona Therapeutics —South San Francisco, CA
- $133,000 - $155,000 a year
- Computer Science
- 3 years
- Analysis skills
Quick Apply
Quigley Lab - Bioinformatics Specialist
UC San Francisco Academic —San Francisco, CA
- $55,000 - $70,700 a year
- Online Application
- Bachelor of Science
- Mid-level
- 3 years
Bioinformatics Engineer, Variant
LatchBio —San Francisco, CA
- Full-time
- 5 years
- In-person
- Senior level
- Food provided
Quick Apply
Scientist III, Bioinformatics
Thermo Fisher Scientific —South San Francisco, CA
- $95,900 - $127,800 a year
- Full-time
- Background check
- Computer Science
- Pass drug screening
- Commuter assistance
- Paid parental leave
Research Scientist, Life Sciences
Anthropic —San Francisco, CA
- $300,000 - $320,000 a year
- Hybrid work
- 5 years
- Office
- Bachelor's degree
- Parental leave
- Flexible schedule
14d
Senior Data Scientist, Computational Biology
Delfi Diagnostics —Palo Alto, CA
- $130,000 - $165,000 a year
- Full-time
- Hybrid work
- Doctoral degree
- Clinic experience
- Office
- Health insurance
- Dental insurance
Bioinformaticist Research Scientist (Joint Genome Institute)
Lawrence Berkeley National Laboratory —San Francisco Bay Area, CA
- $82,860 - $198,888 a year
- Full-time
- Background check
- Mid-level
- Analysis skills
- Health insurance
- 401(k)
1d
Bioinformatics Scientist
Plasmidsaurus —San Francisco, CA
- $170,000 - $190,000 a year
- Full-time
- Hybrid work
- Computer Science
- Research
- Analysis skills
CMPTL & DATA SCI RSH SPEC 3 RP
University of California San Francisco —San Francisco, CA
- Full-time
- Computer Science
- Mid-level
- 3 years

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Computational Scientist II - 30120_J

BEPC Inc -
South San Francisco, CA

Quick Apply

Job Details

Contract
$42.00 - $48.65 an hour
11 days ago

Benefits

Health insurance
Dental insurance
Vision insurance
Life insurance

Qualifications

AI models
Software engineering
Teamwork
Software deployment
Bachelor's degree
Model deployment

Full Job Description

BEPC is actively looking for Computational Scientist II, in South San Francisco, CA area!

W2 Contract | 6 – 12 months with possible extensions!

Benefits include medical, dental, vision, and life insurance

Pay Rate: $42.00 - $48.65/hour - Determined based on experience (Paid Weekly)

Work Model: Onsite role

Note: This is a W2 only role — C2C, C2H will not be considered

Summary of the Role:

BEPC is seeking a highly motivated Computational Scientist II to join our client’s site in South San Francisco, CA. This role will support the design, development, and deployment of AI-powered agentic workflows that enhance quantitative drug development by integrating large language model (LLM) technologies into pharmacometric workflows. The position partners closely with Modeling & Simulation Scientists and Clinical Pharmacologists to build scientifically grounded, reliable, and production-ready AI tools that improve scientific planning, analysis, and decision-making. This role also contributes to advancing AI adoption by developing scalable solutions, supporting collaboration across technical and scientific teams, and promoting best practices in AI-driven research.

Summary of Duties and Responsibilities:

Build and Deploy Agentic LLM Workflows

· Design and implement LLM agent-based pipelines that automate or augment complex scientific workflows.

· Develop human-in-the-loop systems that enable scientists to collaborate with AI tools through natural language, iterative feedback, and structured outputs.

· Integrate domain-specific context, including internal guidelines, templates, and scientific reference materials, into LLM workflows to ensure outputs meet scientific and regulatory standards.

· Package reusable LLM workflow components and libraries.

· Ensure AI tools are production-ready, well-documented, and accessible to users with varying technical backgrounds.

Develop Quality and Evaluation Infrastructure

· Build automated quality control systems to evaluate LLM outputs for structural integrity, scientific accuracy, and consistency.

· Design evaluation frameworks to measure output quality, efficiency improvements, and failure modes over time.

· Maintain version-controlled evaluation logs.

· Contribute to periodic reports supporting continuous tool improvement and stakeholder communication.

Collaborate and Innovate

· Work closely with pharmacometricians, data scientists, and automation engineers to translate scientific requirements into robust AI solutions.

· Stay current with advances in LLM technologies, agentic frameworks, and AI applications in drug development and research.

· Share best practices, lessons learned, and provide training to support broader AI adoption across Developmental Sciences.

Qualifications:

Education: Master's or PhD in Computer Science, Data Science, Bioinformatics, Computational Biology, Pharmaceutical Sciences, or a related quantitative/computational field. OR Bachelor's degree with a minimum of 5 years of relevant experience.

Technical Qualifications:

Solid software engineering experience.
Experience with standard software development practices including:
Git version control
Code reviews
Documentation
Collaborative codebases
Experience working with structured and unstructured data.
Ability to quickly learn new tools and frameworks.
Experience designing, building, or deploying LLM-powered pipelines.
Experience with one or more of the following:
Agentic frameworks (e.g., LangSmith)
Retrieval-Augmented Generation (RAG)
Harness engineering
Guardrail design
LLM API integration
Strong collaboration and communication skills.
Self-directed with the ability to work effectively in evolving or ambiguous environments.
Curiosity and interest in applying AI to real-world scientific challenges.

Preferred Qualifications:

Familiarity with drug development or pharmaceutical R&D.
Knowledge of clinical development processes, quantitative sciences, or life sciences research.
Experience with cloud platforms such as AWS, GCP, or Azure.
Portfolio of relevant AI or software engineering projects.
Interest in applying AI to accelerate drug development and scientific research.

Interview Process: Phone interview followed by an in-person interview

About BEPC

BEPC Inc., founded in 2007, is a 100% employee-owned company providing top-tier consulting and staffing solutions across industries like technology, engineering, manufacturing, and project management. At BEPC, we are driven by innovation and a commitment to excellence. We take pride in fostering a collaborative and innovative environment where our team members thrive. With competitive benefits, including medical, dental, vision, and life insurance, BEPC is dedicated to supporting our employees' personal and professional growth.

Apply Now!

Qualified candidates are encouraged to apply by submitting an up-to-date resume that highlights how your experience aligns with the role. Please include specific examples that demonstrate your qualifications. We look forward to connecting with you!

USOPS

Job Type: Contract

Pay: $42.00 - $48.65 per hour

Education:

Bachelor's (Required)

Location:

South San Francisco, CA 94080 (Preferred)

Ability to Commute:

South San Francisco, CA 94080 (Required)

Work Location: In person

Quick Apply

Refine Your Search

bioinformatics scientist jobs in san mateo, ca

Computational Scientist II - 30120_J

BIOINFORMATICS PROGR

Staff Scientist, Bioinformatics

Bioinformatics Programmer 3

Scientific Evals

Data Scientist

Bioinformatics Production Analyst/Production Engineer

Bioinformatics Data Scientist II

BIOINFORMATICS SPECIALIST (JUNIOR, ASSISTANT, ASSOCIATE, or FULL Rank) - ULLIAN LAB

Assistant/Associate/ Full Specialist on Bioinformatics/ Computational Biology study selective vulnerability in human neurodegenerative diseases

Bioinformatics Engineer

Bioinformatics Scientist (Discovery Biology)

Quigley Lab - Bioinformatics Specialist

Bioinformatics Engineer, Variant

Scientist III, Bioinformatics

Research Scientist, Life Sciences

Senior Data Scientist, Computational Biology

Bioinformaticist Research Scientist (Joint Genome Institute)

Bioinformatics Scientist

CMPTL & DATA SCI RSH SPEC 3 RP

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